The strict consensus in the major 03 of all topologies. As a
The strict consensus from the top 03 of all topologies. As a correlate, quite a few hardtorecover nodes, such as all of these along the backbone, have low (i.e ,50 ) bootstrap help, but elsewhere within the tree you can find some examples of nodes with low bootstrap help which can be not hardtorecover, and you will discover numerous examples of difficulttorecover groups that do have bootstrap 50 , so the correlation with bootstrap support is variable. By way of example, of taxonomic groups located in the ideal topology (Figure 2), Pyraloidea and butterflies possess the highest bootstrap percentages (namely, 74 and 83, respectively) of any group that is not present in all topologies in the major 03 and 02 , respectively.Molecular Phylogenetics of LepidopteraPLOS 1 plosone.orgMolecular Phylogenetics of LepidopteraFigure two. Assessing the effectiveness on the GARLI heuristic ML search by way of an evaluation of 4608 search replicates as derived in the complete 483taxon, 9gene, nt23_degen information set. Out of 4608 search replicates, the single fullyresolved topology of highest likelihood is displayed (lnL 2583,900.053394). Terminal taxa, not shown within this figure so that you can save space, are displayed in Figure S. Dichotomous nodes that are not present in 1 or additional strict consensuses of subsets of your 4608 topologies are identified by obtaining numbers with blue coloration above subtending branches. The three subsets are as follows: four, all topologies with lnL scores which can be within 0.000 (04 ) of that of the finest ML topology (two topologies total, including the most effective ML topology); 3, all topologies inside 0.00 (03 , 9 topologies total); two, all topologies inside 0.0 (02 , 827 topologies total). Chosen bootstrap percentages depending on 5 heuristic search replicates and 500 bootstrap pseudoreplicates which can be 50 are displayed under branches (see Figure S for all bootstrap percentages). An orangecolored bar is placed beside each node which has bootstrap assistance 50 and that may be missing in a single or additional on the subset consensuses. The dashed arrow identifies the altered placement of one (and only a single) taxon that was found in a new and enhanced topology (lnL 2583,898.83866), when the dichotomous topology displayed within this figure was made use of as a beginning tree inside a second round of 56 GARLI ML heuristic searches. This new topology was recovered in 248 of your 56 search replicates. Higherlevel taxon names, some of that are abbreviated, are displayed. All abbreviations stick to: AnthPhiditCarthEndrom Anthelidae Phiditidae MI-136 site Carthaeidae PubMed ID:https://www.ncbi.nlm.nih.gov/pubmed/19568436 Endromidae; SaturnSphingBomb Saturniidae Sphingidae Bombycidae; EupterotBrahmApat Eupterotidae Brahmaeidae Apatelodidae; NolidaeStictopt Nolidae Stictopterinae; NotodontOenosand Notodontidae Oenosandridae; Uraniid.Epiplemidae, Uraniidae Epiplemidae; Sematur.Epicopeiidae, Sematuridae Epicopeiidae; Papilion Papilionidae; PterophoridCopromorph Pterophoridae (element) Copromorphidae (element); Copromorph Copromorphidae (part); Callidul Callidulidae; “small ditrysian families”, Copromorphidae Carposinidae Epermeniidae Alucitidae Hyblaeidae Pterophoridae (part) Thyrididae Pseudurgis (unplaced); Dalcer.Limacodidae, Dalceridae Limacodidae; MegalopygAidosHimant Megalopygidae Aidos Himantopteridae; Zygaen.Lacturidae, Zygaenidae Lacturidae; ChoreutidSchreckenstein.Douglasiidae, Choreutidae Schreckensteiniidae Douglasiidae. doi:0.37journal.pone.0058568.gNone in the three nodes that differ in between the major two topologies (i.e the best 04 ) have bootstraps five.